STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF78654.1Glucoamylase (glucan-1,4-alpha-glucosidase), GH15 family. (603 aa)    
Predicted Functional Partners:
SDG28440.1
Trehalose 6-phosphate synthase.
 
  
 0.911
SDG28538.1
Trehalose 6-phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
 
  
 0.881
SDF78617.1
Glucose 1-dehydrogenase.
       0.773
SDG39947.1
Glucokinase; Belongs to the bacterial glucokinase family.
    
 0.598
SDG39147.1
Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain.
  
 
  0.587
SDF78545.1
DNA repair exonuclease SbcCD ATPase subunit.
       0.505
SDF78581.1
DNA repair exonuclease SbcCD nuclease subunit.
       0.505
SDF98143.1
beta-N-acetylhexosaminidase.
 
 
  0.471
SDG39044.1
Small-conductance mechanosensitive channel.
  
     0.464
SDG42319.1
Sucrose-phosphate synthase.
    
  0.450
Your Current Organism:
Sulfitobacter delicatus
NCBI taxonomy Id: 218672
Other names: ATCC BAA-321, DSM 16477, KMM 3584, LMG 20554, LMG:20554, S. delicatus, Sulfitobacter delicae, Sulfitobacter delicatus Ivanova et al. 2004, Sulfitobacter deliciae
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