STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF87076.1Putative phage cell wall peptidase, NlpC/P60 family. (147 aa)    
Predicted Functional Partners:
SDF87006.1
Phage tail tape measure protein, lambda family.
 
  
 0.966
SDF87107.1
Putative phage tail protein.
 
   
 0.966
SDF87026.1
TIGR02217 family protein.
 
     0.965
SDF87056.1
Phage conserved hypothetical protein BR0599.
 
     0.965
SDF86954.1
Phage tail tube protein, GTA-gp10.
 
    0.954
SDF86928.1
Phage major tail protein, TP901-1 family.
 
     0.953
SDF86837.1
Phage conserved hypothetical protein, phiE125 gp8 family.
 
     0.931
SDF86898.1
Protein of unknown function.
 
     0.922
SDF86872.1
Phage head-tail adaptor, putative, SPP1 family.
 
     0.915
SDF86692.1
Phage portal protein, HK97 family.
 
    0.886
Your Current Organism:
Sulfitobacter delicatus
NCBI taxonomy Id: 218672
Other names: ATCC BAA-321, DSM 16477, KMM 3584, LMG 20554, LMG:20554, S. delicatus, Sulfitobacter delicae, Sulfitobacter delicatus Ivanova et al. 2004, Sulfitobacter deliciae
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