STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG29902.1TRAP-type C4-dicarboxylate transport system, substrate-binding protein. (339 aa)    
Predicted Functional Partners:
SDG29928.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
 
 0.970
SDG29948.1
TRAP transporter, DctM subunit.
 
 
 0.919
SDF00251.1
TRAP transporter, DctM subunit.
 
 
 0.846
SDF00285.1
Tripartite ATP-independent transporter, DctQ component.
  
 
  0.844
SDG81401.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
 
  0.796
SDF11193.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
 
  0.767
SDF78430.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
  
 
  0.745
SDF82977.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
 
  0.702
SDG29494.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
 
  0.702
SDF13520.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
 
  0.693
Your Current Organism:
Sulfitobacter delicatus
NCBI taxonomy Id: 218672
Other names: ATCC BAA-321, DSM 16477, KMM 3584, LMG 20554, LMG:20554, S. delicatus, Sulfitobacter delicae, Sulfitobacter delicatus Ivanova et al. 2004, Sulfitobacter deliciae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.