STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG76012.1Lipoprotein-anchoring transpeptidase ErfK/SrfK. (197 aa)    
Predicted Functional Partners:
SDG91521.1
D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4).
     
 0.662
SDG98435.1
Peptidoglycan glycosyltransferase.
     
 0.657
SDF81908.1
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family.
    
 0.649
SDG92566.1
Lipoprotein-anchoring transpeptidase ErfK/SrfK.
  
     0.622
SDG76043.1
L,D-transpeptidase catalytic domain.
 
    
0.610
SDF16502.1
L,D-transpeptidase catalytic domain.
 
     0.576
SDH11569.1
L,D-transpeptidase catalytic domain.
 
     0.570
SDG75943.1
Two-component system, OmpR family, response regulator.
       0.568
SDG75977.1
Signal transduction histidine kinase.
       0.568
SDF07485.1
Penicillin-insensitive murein endopeptidase.
  
     0.535
Your Current Organism:
Sulfitobacter delicatus
NCBI taxonomy Id: 218672
Other names: ATCC BAA-321, DSM 16477, KMM 3584, LMG 20554, LMG:20554, S. delicatus, Sulfitobacter delicae, Sulfitobacter delicatus Ivanova et al. 2004, Sulfitobacter deliciae
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