STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFG29229.1Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (306 aa)    
Predicted Functional Partners:
SFG88069.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.626
SFG29280.1
CBS domain-containing protein.
       0.588
SFG27069.1
Hypothetical protein.
  
    0.575
SFG54825.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.569
SFG29187.1
Methylmalonate-semialdehyde dehydrogenase [acylating].
       0.540
SFH15706.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.517
SFG95951.1
Glutamate synthase (NADPH) large subunit.
     
 0.463
SFG29073.1
Enoyl-CoA hydratase/carnithine racemase.
 
     0.447
SFG29150.1
Carboxylate-amine ligase; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily.
       0.440
SFG63024.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.427
Your Current Organism:
Sulfitobacter dubius
NCBI taxonomy Id: 218673
Other names: ATCC BAA-320, DSM 16472, KMM 3554, LMG 20555, LMG:20555, S. dubius, Sulfitobacter dubium, Sulfitobacter dubius Ivanova et al. 2004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.