STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFG48046.1Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain. (416 aa)    
Predicted Functional Partners:
surE
5'-nucleotidase /3'-nucleotidase; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.
 
  
 0.839
pcm
protein-L-isoaspartate(D-aspartate) O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.
     
 0.798
SFG37601.1
Cyanophycin synthetase.
    
 0.601
hfq
RNA-binding protein Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family.
 
    0.578
SFG47942.1
Short-chain dehydrogenase.
  
    0.573
SFG43798.1
Hypothetical protein.
  
     0.519
pheS
phenylalanyl-tRNA synthetase, alpha subunit; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.
    
  0.512
SFG98178.1
Penicillin-binding protein, 1A family.
  
   
 0.509
SFG67073.1
Hypothetical protein.
  
     0.495
SFG52284.1
Cell division protein FtsI (penicillin-binding protein 3).
 
   
 0.472
Your Current Organism:
Sulfitobacter dubius
NCBI taxonomy Id: 218673
Other names: ATCC BAA-320, DSM 16472, KMM 3554, LMG 20555, LMG:20555, S. dubius, Sulfitobacter dubium, Sulfitobacter dubius Ivanova et al. 2004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.