STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFG97072.1Lipoprotein-anchoring transpeptidase ErfK/SrfK. (221 aa)    
Predicted Functional Partners:
SFG97049.1
Hypothetical protein.
  
     0.767
SFH10083.1
D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4).
     
 0.724
SFH09167.1
Peptidoglycan glycosyltransferase.
     
 0.718
SFG24450.1
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family.
    
 0.707
SFH21685.1
Hypothetical protein.
  
     0.587
SFH38646.1
Replication initiation protein RepC.
  
     0.543
SFG97095.1
PAS domain S-box-containing protein.
       0.462
SFG97120.1
Glutaredoxin.
 
     0.447
SFH30399.1
Replication initiation protein RepC.
  
     0.425
Your Current Organism:
Sulfitobacter dubius
NCBI taxonomy Id: 218673
Other names: ATCC BAA-320, DSM 16472, KMM 3554, LMG 20555, LMG:20555, S. dubius, Sulfitobacter dubium, Sulfitobacter dubius Ivanova et al. 2004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.