STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFH13873.1Hypothetical protein. (128 aa)    
Predicted Functional Partners:
SFH36851.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
  
  
  0.713
SFG94531.1
TRAP transporter, 4TM/12TM fusion protein.
  
 
  0.679
SFH16831.1
TRAP transporter, 4TM/12TM fusion protein.
  
 
  0.679
SFH29340.1
TRAP transporter, 4TM/12TM fusion protein.
  
 
  0.679
SFG22003.1
PAS domain S-box-containing protein.
    
  0.624
SFH30780.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
  
  0.604
SFG96925.1
TRAP-type C4-dicarboxylate transport system, small permease component.
   
 
  0.540
SFH11175.1
TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
   
 
  0.526
SFH15728.1
TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
   
 
  0.526
SFH29911.1
TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
   
 
  0.526
Your Current Organism:
Sulfitobacter dubius
NCBI taxonomy Id: 218673
Other names: ATCC BAA-320, DSM 16472, KMM 3554, LMG 20555, LMG:20555, S. dubius, Sulfitobacter dubium, Sulfitobacter dubius Ivanova et al. 2004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.