STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEF20133.1Hypothetical protein. (165 aa)    
Predicted Functional Partners:
SEF37395.1
Anti-sigma regulatory factor (Ser/Thr protein kinase).
  
 0.636
SEF20131.1
Hypothetical protein.
       0.620
SEF30885.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
  
 
 0.550
SEF32252.1
Two-component system, OmpR family, sensor histidine kinase MprB.
   
 0.522
SEF20136.1
DNA-binding transcriptional regulator, IclR family.
  
    0.504
SEF35973.1
Hypothetical protein.
  
    0.503
SEF21186.1
Histidine kinase.
  
  0.473
SEF35911.1
Hypothetical protein.
  
     0.469
SEF20128.1
Hypothetical protein.
       0.458
SEF36525.1
Signal transduction histidine kinase.
  
  0.442
Your Current Organism:
Amycolatopsis pretoriensis
NCBI taxonomy Id: 218821
Other names: A. pretoriensis, Amycolatopsis pretoriensis Labeda et al. 2003, DSM 44654, JCM 12673, NRRL B-24133, strain ARC OV1 0181
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.