STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEF23613.1Glucose / Sorbosone dehydrogenase. (284 aa)    
Predicted Functional Partners:
SEF23614.1
Glucose / Sorbosone dehydrogenase.
  
  0.995
SEF23853.1
F5/8 type C domain-containing protein.
 
  
  0.829
SEF33291.1
Glucose dehydrogenase.
 
 
 0.697
SEF35465.1
Streptogrisin C.
 
 
 0.683
SEF37762.1
Carbohydrate binding module (family 35).
  
  
  0.641
SEF33162.1
Glucose/arabinose dehydrogenase, beta-propeller fold.
  
  
  0.630
SEF35069.1
Raf kinase inhibitor-like protein, YbhB/YbcL family.
 
 
  0.614
SEF28981.1
LGFP repeat-containing protein.
  
  
  0.606
SEF27252.1
Predicted ATPase.
 
    0.602
SEF36434.1
Glucose/arabinose dehydrogenase, beta-propeller fold.
 
 
  0.599
Your Current Organism:
Amycolatopsis pretoriensis
NCBI taxonomy Id: 218821
Other names: A. pretoriensis, Amycolatopsis pretoriensis Labeda et al. 2003, DSM 44654, JCM 12673, NRRL B-24133, strain ARC OV1 0181
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.