STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEF23666.1Anti-anti-sigma factor; Belongs to the anti-sigma-factor antagonist family. (118 aa)    
Predicted Functional Partners:
SEF37395.1
Anti-sigma regulatory factor (Ser/Thr protein kinase).
 
 0.972
SEF23664.1
sigma-B regulation protein RsbU (phosphoserine phosphatase).
 
 0.956
SEF24986.1
PAS domain S-box-containing protein.
  
 0.944
SEF38373.1
Serine phosphatase RsbU, regulator of sigma subunit.
 
 0.929
SEF24983.1
GAF domain-containing protein.
 
 0.920
SEF26199.1
Serine phosphatase RsbU, regulator of sigma subunit.
 
 0.893
SEF24236.1
Anti-sigma regulatory factor (Ser/Thr protein kinase).
 
 0.864
SEF23662.1
sigma-B regulation protein RsbQ.
 
     0.811
SEF33205.1
Serine phosphatase RsbU, regulator of sigma subunit.
 
  0.770
SEF24226.1
Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family.
  
     0.727
Your Current Organism:
Amycolatopsis pretoriensis
NCBI taxonomy Id: 218821
Other names: A. pretoriensis, Amycolatopsis pretoriensis Labeda et al. 2003, DSM 44654, JCM 12673, NRRL B-24133, strain ARC OV1 0181
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