STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEF24066.1Predicted kinase. (177 aa)    
Predicted Functional Partners:
SEF24068.1
Esterase PHB depolymerase.
       0.529
SEF29487.1
Trehalose-phosphatase.
   
    0.528
SEF37301.1
Adenylylsulfate kinase.
    
  0.493
SEF36767.1
Hypothetical protein.
   
    0.491
SEF28653.1
Fructose-bisphosphate aldolase; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis; Belongs to the class II fructose-bisphosphate aldolase family.
    
  0.456
SEF37507.1
Fructose-bisphosphate aldolase, class II.
    
  0.456
SEF32245.1
Hypothetical protein.
   
 
  0.436
SEF32018.1
Hypothetical protein.
   
 
  0.436
SEF23230.1
Hypothetical protein.
   
    0.433
SEF37696.1
Hypothetical protein.
   
    0.433
Your Current Organism:
Amycolatopsis pretoriensis
NCBI taxonomy Id: 218821
Other names: A. pretoriensis, Amycolatopsis pretoriensis Labeda et al. 2003, DSM 44654, JCM 12673, NRRL B-24133, strain ARC OV1 0181
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