STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEF27393.1Peptidogalycan biosysnthesis/recognition. (419 aa)    
Predicted Functional Partners:
SEF27392.1
CobW/HypB/UreG, nucleotide-binding domain.
  
    0.725
SEF24078.1
Putative peptidoglycan binding domain-containing protein.
  
     0.719
SEF27391.1
Methyltransferase domain-containing protein.
       0.698
SEF31166.1
Heparinase II/III N-terminus.
  
    0.689
SEF31187.1
Polysaccharide pyruvyl transferase family protein WcaK.
  
     0.688
SEF23106.1
Protein of unknown function.
  
     0.679
SEF27394.1
Radical SAM superfamily protein.
       0.670
SEF31168.1
Right handed beta helix region.
  
     0.657
SEF31155.1
Chain length determinant protein.
 
     0.632
SEF33861.1
Right handed beta helix region.
  
     0.630
Your Current Organism:
Amycolatopsis pretoriensis
NCBI taxonomy Id: 218821
Other names: A. pretoriensis, Amycolatopsis pretoriensis Labeda et al. 2003, DSM 44654, JCM 12673, NRRL B-24133, strain ARC OV1 0181
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.