STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEF30311.1Two component transcriptional regulator, LytTR family. (264 aa)    
Predicted Functional Partners:
SEF30306.1
Two-component system, LytT family, sensor kinase.
 
 0.968
SEF36968.1
Two-component system, LytT family, sensor kinase.
 
 0.955
SEF30313.1
Hypothetical protein.
 
     0.938
SEF30315.1
Sodium:solute symporter family protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
     0.923
SEF37360.1
Glutamate-5-semialdehyde dehydrogenase.
    
   0.627
SEF24986.1
PAS domain S-box-containing protein.
 
  
 0.624
SEF37395.1
Anti-sigma regulatory factor (Ser/Thr protein kinase).
    
 0.602
SEF36965.1
Sodium:solute symporter family protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
     0.582
SEF38320.1
Sensor histidine kinase regulating citrate/malate metabolism.
 
  
 0.575
SEF30625.1
Two-component system, CitB family, sensor kinase.
 
  
 0.572
Your Current Organism:
Amycolatopsis pretoriensis
NCBI taxonomy Id: 218821
Other names: A. pretoriensis, Amycolatopsis pretoriensis Labeda et al. 2003, DSM 44654, JCM 12673, NRRL B-24133, strain ARC OV1 0181
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.