STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEF35994.1Putative flippase GtrA (transmembrane translocase of bactoprenol-linked glucose). (172 aa)    
Predicted Functional Partners:
SEF32938.1
GDSL-like Lipase/Acylhydrolase family protein.
  
     0.649
SEF30294.1
Glycosyltransferase involved in cell wall bisynthesis.
  
 
 0.643
SEF35995.1
Putative flippase GtrA (transmembrane translocase of bactoprenol-linked glucose).
 
    
0.641
SEF35996.1
RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
       0.640
SEF38369.1
Hypothetical protein.
 
     0.637
SEF34033.1
Hypothetical protein.
  
     0.631
SEF34198.1
Hypothetical protein.
  
     0.609
SEF28550.1
Hypothetical protein.
 
     0.606
SEF29191.1
Helicase/secretion neighborhood TadE-like protein.
  
     0.596
SEF27088.1
Hypothetical protein.
  
     0.518
Your Current Organism:
Amycolatopsis pretoriensis
NCBI taxonomy Id: 218821
Other names: A. pretoriensis, Amycolatopsis pretoriensis Labeda et al. 2003, DSM 44654, JCM 12673, NRRL B-24133, strain ARC OV1 0181
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.