STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEF36080.1Transmembrane transcriptional regulator (anti-sigma factor RsiW). (216 aa)    
Predicted Functional Partners:
SEF36079.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
 
 0.888
SEF30929.1
Heparin binding hemagglutinin HbhA.
  
     0.748
SEF28550.1
Hypothetical protein.
  
     0.734
SEF34241.1
Hypothetical protein.
  
     0.731
SEF28303.1
Hypothetical protein.
  
     0.729
SEF36114.1
Hypothetical protein.
  
     0.729
SEF25344.1
Hypothetical protein.
  
     0.726
SEF36952.1
Hypothetical protein.
  
    0.715
SEF28088.1
Hypothetical protein.
  
     0.710
SEF33729.1
Protein of unknown function.
  
     0.693
Your Current Organism:
Amycolatopsis pretoriensis
NCBI taxonomy Id: 218821
Other names: A. pretoriensis, Amycolatopsis pretoriensis Labeda et al. 2003, DSM 44654, JCM 12673, NRRL B-24133, strain ARC OV1 0181
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.