SEF36440.1 protein (Amycolatopsis pretoriensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SEF36440.1

Cytochrome P450. (358 aa)

Predicted Functional Partners:

SEF37551.1

0.995

SEF24659.1

0.993

SEF23970.1

0.965

SEF23972.1

0.965

SEF24187.1

0.965

SEF24271.1

0.965

SEF24304.1

0.961

SEF21451.1

0.890

SEF24463.1

0.862

SEF24637.1

0.862

Your Current Organism:

Amycolatopsis pretoriensis

NCBI taxonomy Id: 218821
Other names: A. pretoriensis, Amycolatopsis pretoriensis Labeda et al. 2003, DSM 44654, JCM 12673, NRRL B-24133, strain ARC OV1 0181

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SEF21451.1	SEF23970.1	SAMN05421837_101870	SAMN05421837_102503	Acyl transferase domain-containing protein.	Amino acid adenylation domain-containing protein.	0.999
SEF21451.1	SEF23972.1	SAMN05421837_101870	SAMN05421837_102504	Acyl transferase domain-containing protein.	Amino acid adenylation domain-containing protein.	0.999
SEF21451.1	SEF24187.1	SAMN05421837_101870	SAMN05421837_102603	Acyl transferase domain-containing protein.	Amino acid adenylation domain-containing protein.	0.999
SEF21451.1	SEF24271.1	SAMN05421837_101870	SAMN05421837_102637	Acyl transferase domain-containing protein.	Phosphopantetheine attachment site.	0.999
SEF21451.1	SEF24304.1	SAMN05421837_101870	SAMN05421837_102650	Acyl transferase domain-containing protein.	Amino acid adenylation domain-containing protein.	0.999
SEF21451.1	SEF24463.1	SAMN05421837_101870	SAMN05421837_102720	Acyl transferase domain-containing protein.	Acyl transferase domain-containing protein.	0.993
SEF21451.1	SEF24637.1	SAMN05421837_101870	SAMN05421837_102798	Acyl transferase domain-containing protein.	Methylaspartate mutase epsilon subunit.	0.991
SEF21451.1	SEF24659.1	SAMN05421837_101870	SAMN05421837_102807	Acyl transferase domain-containing protein.	Pristinamycin I synthase-3 and 4.	0.999
SEF21451.1	SEF36440.1	SAMN05421837_101870	SAMN05421837_110195	Acyl transferase domain-containing protein.	Cytochrome P450.	0.890
SEF21451.1	SEF37551.1	SAMN05421837_101870	SAMN05421837_114111	Acyl transferase domain-containing protein.	Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.	0.999
SEF23970.1	SEF21451.1	SAMN05421837_102503	SAMN05421837_101870	Amino acid adenylation domain-containing protein.	Acyl transferase domain-containing protein.	0.999
SEF23970.1	SEF23972.1	SAMN05421837_102503	SAMN05421837_102504	Amino acid adenylation domain-containing protein.	Amino acid adenylation domain-containing protein.	0.999
SEF23970.1	SEF24187.1	SAMN05421837_102503	SAMN05421837_102603	Amino acid adenylation domain-containing protein.	Amino acid adenylation domain-containing protein.	0.999
SEF23970.1	SEF24271.1	SAMN05421837_102503	SAMN05421837_102637	Amino acid adenylation domain-containing protein.	Phosphopantetheine attachment site.	0.999
SEF23970.1	SEF24304.1	SAMN05421837_102503	SAMN05421837_102650	Amino acid adenylation domain-containing protein.	Amino acid adenylation domain-containing protein.	0.999
SEF23970.1	SEF24463.1	SAMN05421837_102503	SAMN05421837_102720	Amino acid adenylation domain-containing protein.	Acyl transferase domain-containing protein.	0.999
SEF23970.1	SEF24637.1	SAMN05421837_102503	SAMN05421837_102798	Amino acid adenylation domain-containing protein.	Methylaspartate mutase epsilon subunit.	0.999
SEF23970.1	SEF24659.1	SAMN05421837_102503	SAMN05421837_102807	Amino acid adenylation domain-containing protein.	Pristinamycin I synthase-3 and 4.	0.999
SEF23970.1	SEF36440.1	SAMN05421837_102503	SAMN05421837_110195	Amino acid adenylation domain-containing protein.	Cytochrome P450.	0.965
SEF23970.1	SEF37551.1	SAMN05421837_102503	SAMN05421837_114111	Amino acid adenylation domain-containing protein.	Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.	0.999