STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEF36467.1cephalosporin-C deacetylase. (318 aa)    
Predicted Functional Partners:
SEF36466.1
Multiple sugar transport system substrate-binding protein.
 
     0.815
SEF36471.1
Carbohydrate binding module (family 35).
 
     0.806
SEF36468.1
alpha-L-fucosidase 2.
       0.786
SEF36470.1
Multiple sugar transport system permease protein.
       0.784
SEF36469.1
Multiple sugar transport system permease protein.
       0.783
SEF36465.1
DNA-binding transcriptional regulator, GntR family.
       0.682
SEF20922.1
Beta-galactosidase.
 
    0.405
Your Current Organism:
Amycolatopsis pretoriensis
NCBI taxonomy Id: 218821
Other names: A. pretoriensis, Amycolatopsis pretoriensis Labeda et al. 2003, DSM 44654, JCM 12673, NRRL B-24133, strain ARC OV1 0181
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.