STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEF36509.1Beta-glucosidase; Belongs to the glycosyl hydrolase 3 family. (608 aa)    
Predicted Functional Partners:
SEF36507.1
Beta-glucosidase; Belongs to the glycosyl hydrolase 1 family.
    
  0.812
SEF36508.1
Type 1 glutamine amidotransferase (GATase1).
       0.682
SEF30682.1
Chitinase.
 
 
 0.660
SEF35848.1
Predicted chitinase.
  
  
  0.656
SEF23675.1
Hypothetical protein.
    
 0.653
SEF30256.1
Beta-glucosidase.
    
  0.630
SEF37586.1
Fibronectin type III domain-containing protein.
  
  
  0.630
SEF23295.1
Beta-glucosidase.
  
  
 
0.624
SEF35827.1
Beta-glucosidase.
  
  
 
0.621
SEF30089.1
N-acetylmuramoyl-L-alanine amidase.
    
 0.607
Your Current Organism:
Amycolatopsis pretoriensis
NCBI taxonomy Id: 218821
Other names: A. pretoriensis, Amycolatopsis pretoriensis Labeda et al. 2003, DSM 44654, JCM 12673, NRRL B-24133, strain ARC OV1 0181
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.