STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEF36258.1Ribose transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. (341 aa)    
Predicted Functional Partners:
SEF36257.1
L-arabinose transport system ATP-binding protein.
  0.984
SEF36970.1
Ribose transport system substrate-binding protein.
 
 0.963
SEF35705.1
Simple sugar transport system substrate-binding protein/ribose transport system substrate-binding protein.
 
 0.962
SEF26110.1
Ribose transport system ATP-binding protein/rhamnose transport system ATP-binding protein.
  0.931
rbsA
Rhamnose transport system ATP-binding protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
  0.930
SEF36256.1
L-arabinose transport system substrate-binding protein.
 
  0.930
SEF23870.1
Ribose transport system ATP-binding protein.
  0.929
SEF36475.1
Ribose transport system ATP-binding protein.
  0.929
SEF26335.1
Ribose transport system ATP-binding protein.
  0.928
SEF21244.1
Simple sugar transport system ATP-binding protein.
  0.927
Your Current Organism:
Amycolatopsis pretoriensis
NCBI taxonomy Id: 218821
Other names: A. pretoriensis, Amycolatopsis pretoriensis Labeda et al. 2003, DSM 44654, JCM 12673, NRRL B-24133, strain ARC OV1 0181
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.