SEF37096.1 protein (Amycolatopsis pretoriensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SEF37096.1

Ankyrin repeat-containing protein. (435 aa)

Predicted Functional Partners:

SEF21722.1

0.865

SEF26437.1

0.860

SEF28474.1

0.858

SEF31976.1

0.815

SEF24463.1

0.810

SEF24637.1

0.810

SEF36348.1

0.810

SEF36346.1

0.810

SEF21774.1

0.778

SEF26278.1

0.778

Your Current Organism:

Amycolatopsis pretoriensis

NCBI taxonomy Id: 218821
Other names: A. pretoriensis, Amycolatopsis pretoriensis Labeda et al. 2003, DSM 44654, JCM 12673, NRRL B-24133, strain ARC OV1 0181

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SEF21722.1	SEF21774.1	SAMN05421837_1011026	SAMN05421837_1011056	NADH-quinone oxidoreductase subunit F.	Acyl transferase domain-containing protein.	0.979
SEF21722.1	SEF24463.1	SAMN05421837_1011026	SAMN05421837_102720	NADH-quinone oxidoreductase subunit F.	Acyl transferase domain-containing protein.	0.980
SEF21722.1	SEF24637.1	SAMN05421837_1011026	SAMN05421837_102798	NADH-quinone oxidoreductase subunit F.	Methylaspartate mutase epsilon subunit.	0.980
SEF21722.1	SEF26278.1	SAMN05421837_1011026	SAMN05421837_103163	NADH-quinone oxidoreductase subunit F.	Acyl transferase domain-containing protein.	0.979
SEF21722.1	SEF36346.1	SAMN05421837_1011026	SAMN05421837_11099	NADH-quinone oxidoreductase subunit F.	Polyene macrolide polyketide synthase/pimaricinolide synthase PimS1.	0.980
SEF21722.1	SEF36348.1	SAMN05421837_1011026	SAMN05421837_110103	NADH-quinone oxidoreductase subunit F.	Methylaspartate mutase epsilon subunit.	0.980
SEF21722.1	SEF37096.1	SAMN05421837_1011026	SAMN05421837_112207	NADH-quinone oxidoreductase subunit F.	Ankyrin repeat-containing protein.	0.865
SEF21774.1	SEF21722.1	SAMN05421837_1011056	SAMN05421837_1011026	Acyl transferase domain-containing protein.	NADH-quinone oxidoreductase subunit F.	0.979
SEF21774.1	SEF24463.1	SAMN05421837_1011056	SAMN05421837_102720	Acyl transferase domain-containing protein.	Acyl transferase domain-containing protein.	0.998
SEF21774.1	SEF24637.1	SAMN05421837_1011056	SAMN05421837_102798	Acyl transferase domain-containing protein.	Methylaspartate mutase epsilon subunit.	0.997
SEF21774.1	SEF26278.1	SAMN05421837_1011056	SAMN05421837_103163	Acyl transferase domain-containing protein.	Acyl transferase domain-containing protein.	0.999
SEF21774.1	SEF26437.1	SAMN05421837_1011056	SAMN05421837_103309	Acyl transferase domain-containing protein.	Hypothetical protein.	0.664
SEF21774.1	SEF31976.1	SAMN05421837_1011056	SAMN05421837_10621	Acyl transferase domain-containing protein.	Ca2+-binding protein, EF-hand superfamily.	0.407
SEF21774.1	SEF36346.1	SAMN05421837_1011056	SAMN05421837_11099	Acyl transferase domain-containing protein.	Polyene macrolide polyketide synthase/pimaricinolide synthase PimS1.	0.997
SEF21774.1	SEF36348.1	SAMN05421837_1011056	SAMN05421837_110103	Acyl transferase domain-containing protein.	Methylaspartate mutase epsilon subunit.	0.997
SEF21774.1	SEF37096.1	SAMN05421837_1011056	SAMN05421837_112207	Acyl transferase domain-containing protein.	Ankyrin repeat-containing protein.	0.778
SEF24463.1	SEF21722.1	SAMN05421837_102720	SAMN05421837_1011026	Acyl transferase domain-containing protein.	NADH-quinone oxidoreductase subunit F.	0.980
SEF24463.1	SEF21774.1	SAMN05421837_102720	SAMN05421837_1011056	Acyl transferase domain-containing protein.	Acyl transferase domain-containing protein.	0.998
SEF24463.1	SEF24637.1	SAMN05421837_102720	SAMN05421837_102798	Acyl transferase domain-containing protein.	Methylaspartate mutase epsilon subunit.	0.992
SEF24463.1	SEF26278.1	SAMN05421837_102720	SAMN05421837_103163	Acyl transferase domain-containing protein.	Acyl transferase domain-containing protein.	0.998