STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEF36979.1Hypothetical protein. (109 aa)    
Predicted Functional Partners:
SEF36981.1
Phage tail protein.
       0.799
SEF36980.1
Phage-related protein.
       0.783
SEF36982.1
Hypothetical protein.
       0.734
SEF36978.1
Hypothetical protein.
       0.717
SEF36983.1
Hypothetical protein.
       0.717
SEF36977.1
Hypothetical protein.
       0.691
SEF36984.1
Hypothetical protein.
       0.691
SEF36976.1
Hypothetical protein.
       0.625
SEF36985.1
Alpha-1,2-mannosidase, putative.
       0.469
Your Current Organism:
Amycolatopsis pretoriensis
NCBI taxonomy Id: 218821
Other names: A. pretoriensis, Amycolatopsis pretoriensis Labeda et al. 2003, DSM 44654, JCM 12673, NRRL B-24133, strain ARC OV1 0181
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.