STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEF37274.1GntR family transcriptional regulator / MocR family aminotransferase. (463 aa)    
Predicted Functional Partners:
SEF37275.1
Predicted arabinose efflux permease, MFS family.
       0.555
SEF37546.1
Phenazine biosynthesis protein phzE.
   
 
 0.520
SEF37551.1
Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 
 0.501
SEF26836.1
2-oxoglutarate decarboxylase.
   
 
  0.489
SEF35803.1
Hypothetical protein.
 
    0.473
SEF29035.1
Aspartate kinase; Belongs to the aspartokinase family.
   
 
 0.434
SEF30798.1
Prephenate dehydrogenase.
    
 0.431
SEF30424.1
Prephenate dehydratase.
    
 0.430
SEF26499.1
Homoserine dehydrogenase.
   
  0.429
SEF23970.1
Amino acid adenylation domain-containing protein.
   
 
  0.427
Your Current Organism:
Amycolatopsis pretoriensis
NCBI taxonomy Id: 218821
Other names: A. pretoriensis, Amycolatopsis pretoriensis Labeda et al. 2003, DSM 44654, JCM 12673, NRRL B-24133, strain ARC OV1 0181
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.