STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEF38111.1protein-L-isoaspartate(D-aspartate) O-methyltransferase. (415 aa)    
Predicted Functional Partners:
SEF38108.1
Lanthionine synthetase C-like protein.
 
     0.886
SEF38109.1
Thiopeptide-type bacteriocin biosynthesis domain-containing protein.
 
  
 0.886
SEF38107.1
Thiopeptide-type bacteriocin biosynthesis domain-containing protein.
    
 0.682
SEF38110.1
FxLD family lantipeptide.
     
 0.663
ispE
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
   
    0.537
SEF33925.1
Glutamate synthase (NADPH/NADH) large chain.
   
  
 0.507
SEF37315.1
Glutamate synthase (NADPH/NADH) large chain.
   
  
 0.507
SEF38112.1
Hypothetical protein.
       0.505
SEF38113.1
Hypothetical protein.
       0.505
SEF37358.1
5-amino-6-(5-phosphoribosylamino)uracil reductase.
 
 
   0.500
Your Current Organism:
Amycolatopsis pretoriensis
NCBI taxonomy Id: 218821
Other names: A. pretoriensis, Amycolatopsis pretoriensis Labeda et al. 2003, DSM 44654, JCM 12673, NRRL B-24133, strain ARC OV1 0181
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.