STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEF38123.1Hypothetical protein. (233 aa)    
Predicted Functional Partners:
SEF38121.1
Hypothetical protein.
       0.773
SEF38122.1
S-adenosyl methyltransferase.
       0.773
SEF38124.1
S-adenosyl methyltransferase.
       0.773
SEF38125.1
Hypothetical protein.
       0.773
SEF38126.1
Hypothetical protein.
       0.773
SEF38127.1
Hypothetical protein.
       0.773
SEF38128.1
Hypothetical protein.
       0.541
SEF38129.1
Hypothetical protein.
       0.541
SEF38119.1
Hypothetical protein.
       0.462
SEF38120.1
Hypothetical protein.
       0.462
Your Current Organism:
Amycolatopsis pretoriensis
NCBI taxonomy Id: 218821
Other names: A. pretoriensis, Amycolatopsis pretoriensis Labeda et al. 2003, DSM 44654, JCM 12673, NRRL B-24133, strain ARC OV1 0181
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.