A0A2G5DP40 protein (Aquilegia coerulea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A2G5DP40

DRIM domain-containing protein. (2702 aa)

Predicted Functional Partners:

A0A2G5E3K5

0.993

A0A2G5EXW5

0.989

A0A2G5DII5

0.978

A0A2G5F275

0.976

A0A2G5F014

0.975

A0A2G5D7K4

0.973

A0A2G5D883

0.972

A0A2G5EA96

0.972

A0A2G5DWH6

0.970

A0A2G5E820

0.970

Your Current Organism:

Aquilegia coerulea

NCBI taxonomy Id: 218851
Other names: A. coerulea, Aquilegia caerulea, Rocky Mountain columbine

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2G5D7K4	A0A2G5D883	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
A0A2G5D7K4	A0A2G5DII5	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.998
A0A2G5D7K4	A0A2G5DP40	WD_REPEATS_REGION domain-containing protein.	DRIM domain-containing protein.	0.973
A0A2G5D7K4	A0A2G5DWH6	WD_REPEATS_REGION domain-containing protein.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.999
A0A2G5D7K4	A0A2G5E3K5	WD_REPEATS_REGION domain-containing protein.	BP28CT domain-containing protein.	0.999
A0A2G5D7K4	A0A2G5E820	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
A0A2G5D7K4	A0A2G5EA96	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.999
A0A2G5D7K4	A0A2G5EXW5	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.999
A0A2G5D7K4	A0A2G5F014	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.999
A0A2G5D7K4	A0A2G5F275	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
A0A2G5D883	A0A2G5D7K4	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
A0A2G5D883	A0A2G5DII5	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.996
A0A2G5D883	A0A2G5DP40	WD_REPEATS_REGION domain-containing protein.	DRIM domain-containing protein.	0.972
A0A2G5D883	A0A2G5DWH6	WD_REPEATS_REGION domain-containing protein.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.987
A0A2G5D883	A0A2G5E3K5	WD_REPEATS_REGION domain-containing protein.	BP28CT domain-containing protein.	0.999
A0A2G5D883	A0A2G5E820	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
A0A2G5D883	A0A2G5EA96	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.998
A0A2G5D883	A0A2G5EXW5	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.993
A0A2G5D883	A0A2G5F014	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.994
A0A2G5D883	A0A2G5F275	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999