A0A2G5EEZ8 protein (Aquilegia coerulea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A2G5EEZ8

Uncharacterized protein. (260 aa)

Predicted Functional Partners:

A0A2G5CH80

0.997

A0A2G5DPW3

0.992

A0A2G5E7N0

0.992

A0A2G5ECS8

0.990

A0A2G5CHP5

0.988

A0A2G5CNJ2

0.987

A0A2G5F1V2

0.987

A0A2G5DWX8

0.986

A0A2G5DMC3

0.983

A0A2G5DQ81

0.983

Your Current Organism:

Aquilegia coerulea

NCBI taxonomy Id: 218851
Other names: A. coerulea, Aquilegia caerulea, Rocky Mountain columbine

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2G5CH80	A0A2G5CHP5	TRASH domain-containing protein.	Brix domain-containing protein.	0.999
A0A2G5CH80	A0A2G5CNJ2	TRASH domain-containing protein.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.999
A0A2G5CH80	A0A2G5DMC3	TRASH domain-containing protein.	Uncharacterized protein.	0.989
A0A2G5CH80	A0A2G5DPW3	TRASH domain-containing protein.	Nuclear/nucleolar GTPase 2; GTPase involved in pre-60S ribosomal subunit maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.	0.999
A0A2G5CH80	A0A2G5DQ81	TRASH domain-containing protein.	Brix domain-containing protein.	0.999
A0A2G5CH80	A0A2G5DWX8	TRASH domain-containing protein.	Ribosomal_L7Ae domain-containing protein.	0.945
A0A2G5CH80	A0A2G5E7N0	TRASH domain-containing protein.	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	0.999
A0A2G5CH80	A0A2G5ECS8	TRASH domain-containing protein.	RRM domain-containing protein.	0.999
A0A2G5CH80	A0A2G5EEZ8	TRASH domain-containing protein.	Uncharacterized protein.	0.997
A0A2G5CH80	A0A2G5F1V2	TRASH domain-containing protein.	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.	0.994
A0A2G5CHP5	A0A2G5CH80	Brix domain-containing protein.	TRASH domain-containing protein.	0.999
A0A2G5CHP5	A0A2G5CNJ2	Brix domain-containing protein.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.999
A0A2G5CHP5	A0A2G5DMC3	Brix domain-containing protein.	Uncharacterized protein.	0.951
A0A2G5CHP5	A0A2G5DPW3	Brix domain-containing protein.	Nuclear/nucleolar GTPase 2; GTPase involved in pre-60S ribosomal subunit maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.	0.999
A0A2G5CHP5	A0A2G5DQ81	Brix domain-containing protein.	Brix domain-containing protein.	0.999
A0A2G5CHP5	A0A2G5DWX8	Brix domain-containing protein.	Ribosomal_L7Ae domain-containing protein.	0.908
A0A2G5CHP5	A0A2G5E7N0	Brix domain-containing protein.	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	0.999
A0A2G5CHP5	A0A2G5ECS8	Brix domain-containing protein.	RRM domain-containing protein.	0.999
A0A2G5CHP5	A0A2G5EEZ8	Brix domain-containing protein.	Uncharacterized protein.	0.988
A0A2G5CHP5	A0A2G5F1V2	Brix domain-containing protein.	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.	0.999