STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEP70462.1Conserved hypothetical protein. (231 aa)    
Predicted Functional Partners:
EEP71689.1
Carbohydrate kinase; Truncated CDS; unextendable partial coding region.
  
 0.975
EEP70461.1
Hypothetical protein.
     0.943
EEP71022.1
Truncated CDS.
   
 0.822
rph
Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
    
 0.747
EEP70005.1
DEAD/DEAH box helicase domain-containing protein; Belongs to the DEAD box helicase family.
    
 0.738
EEP71573.1
ATP-dependent RNA helicase.
    
 0.738
EEP71839.1
DEAD/DEAH box helicase domain-containing protein; Truncated CDS; unextendable partial coding region; Belongs to the DEAD box helicase family.
    
 0.738
EEP72818.1
RNA helicase.
    
 0.738
ribBA
Riboflavin biosynthesis protein ribBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
   
  0.705
EEP72800.1
GAF sensor hybrid histidine kinase.
    
 0.690
Your Current Organism:
Micromonospora sp. ATCC 39149
NCBI taxonomy Id: 219305
Other names: M. sp. ATCC 39149, Micromonospora carbonacea var. africana, Micromonospora sp. NRRL 15099
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