STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A7J50_1081Putative sugar transport-related, membrane protein; Pfam:pfam00083 Sugar (and other) transporter. (446 aa)    
Predicted Functional Partners:
A7J50_1082
Pfam:pfam00106 short chain dehydrogenase.
 
   
 0.827
A7J50_1080
Putative deacetylase; Pfam:pfam01522 Polysaccharide deacetylase.
 
     0.788
A7J50_1032
Pfam:pfam07690 Major Facilitator Superfamily.
  
     0.735
A7J50_1084
Hypothetical protein.
 
     0.703
A7J50_1079
Hypothetical protein; Pfam:pfam01425 Amidase; Belongs to the amidase family.
       0.680
A7J50_1083
3-oxoacyl-ACP reductase; Pfam:pfam00106 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
   
 0.627
A7J50_4582
MFS transporter; Pfam:pfam00083 Sugar (and other) transporter.
  
     0.618
cysG
Sirohydrochlorin ferrochelatase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme. Belongs to the precorrin methyltransferase family. In the N-terminal section; belongs to the precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase family.
  
  
 0.615
A7J50_1085
Cobalamin biosynthesis protein CobW; Pfam:pfam02492 CobW/HypB/UreG, nucleotide-binding domain.
 
     0.607
A7J50_1086
Hypothetical protein.
 
     0.607
Your Current Organism:
Pseudomonas antarctica
NCBI taxonomy Id: 219572
Other names: CCUG 49625, DSM 15318, LMG 22709, LMG:22709, MTCC 4992, Pseudomonas antarctica Reddy et al. 2004, strain CMS 35
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