STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A7J50_1451Acyl-homoserine lactone acylase subunit beta; Pfam:pfam01804 Penicillin amidase. (813 aa)    
Predicted Functional Partners:
A7J50_3273
Pyoverdine synthetase I; Pfam:pfam00501 AMP-binding enzyme.
  
  
 0.646
A7J50_2030
Hypothetical protein.
  
     0.498
A7J50_1450
Exonuclease.
       0.463
A7J50_1449
Pfam:pfam01068 ATP dependent DNA ligase domain.
       0.462
A7J50_4438
Putative lipoprotein; Pfam:pfam14346 Domain of unknown function (DUF4398).
  
     0.457
A7J50_0490
Pfam:pfam03886 Protein of unknown function (DUF330).
  
     0.454
A7J50_0989
Alginate biosynthesis protein AlgK.
  
     0.440
A7J50_1452
Pfam:pfam13409 Glutathione S-transferase, N-terminal domain; Belongs to the GST superfamily.
       0.440
algL
poly(beta-D-mannuronate) lyase; Catalyzes the depolymerization of alginate by cleaving the beta-1,4 glycosidic bond between two adjacent sugar residues via a beta-elimination mechanism; Belongs to the polysaccharide lyase 5 family.
  
     0.419
A7J50_0987
Poly(Beta-D-mannuronate) C5 epimerase; Pfam:pfam13229 Right handed beta helix region.
  
     0.411
Your Current Organism:
Pseudomonas antarctica
NCBI taxonomy Id: 219572
Other names: CCUG 49625, DSM 15318, LMG 22709, LMG:22709, MTCC 4992, Pseudomonas antarctica Reddy et al. 2004, strain CMS 35
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