STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A7J50_2000Pfam:pfam13302 Acetyltransferase (GNAT) domain. (184 aa)    
Predicted Functional Partners:
A7J50_2001
Pfam:pfam09423 PhoD-like phosphatase.
 
     0.812
A7J50_0696
[SSU ribosomal protein S5P]-alanine acetyltransferase; Pfam:pfam13302 Acetyltransferase (GNAT) domain.
  
   
 0.630
A7J50_3229
Pfam:pfam13302 Acetyltransferase (GNAT) domain.
  
     0.624
A7J50_3273
Pyoverdine synthetase I; Pfam:pfam00501 AMP-binding enzyme.
  
  
 0.573
A7J50_1999
Pfam:pfam02472 Biopolymer transport protein ExbD/TolR.
       0.520
A7J50_1998
Biopolymer transporter TonB.
  
    0.519
A7J50_3149
GNAT family acetyltraansferase; Pfam:pfam13302 Acetyltransferase (GNAT) domain.
  
     0.499
A7J50_3635
L-ornithine 5-monooxygenase; Pfam:pfam13434 L-lysine 6-monooxygenase (NADPH-requiring).
  
  
 0.484
A7J50_1997
TonB-dependent outermembrane receptor; Pfam:pfam00593 TonB dependent receptor.
     
 0.479
A7J50_4182
Siderophore synthetase; Pfam:pfam04183 IucA / IucC family.
 
  
 0.475
Your Current Organism:
Pseudomonas antarctica
NCBI taxonomy Id: 219572
Other names: CCUG 49625, DSM 15318, LMG 22709, LMG:22709, MTCC 4992, Pseudomonas antarctica Reddy et al. 2004, strain CMS 35
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