STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A7J50_2011MFS transporter; Pfam:pfam07690 Major Facilitator Superfamily. (395 aa)    
Predicted Functional Partners:
A7J50_2010
Pfam:pfam00440 Bacterial regulatory proteins, tetR family.
 
     0.864
A7J50_2012
C4-dicarboxylate transporter; Pfam:pfam03595 Voltage-dependent anion channel.
 
     0.671
A7J50_3119
acyl-CoA dehydrogenase.
  
     0.542
A7J50_3121
Methyltransferase; Pfam:pfam05401 Nodulation protein S (NodS).
  
     0.512
A7J50_3122
Pfam:pfam00535 Glycosyl transferase family 2.
  
     0.498
A7J50_3273
Pyoverdine synthetase I; Pfam:pfam00501 AMP-binding enzyme.
  
  
 0.496
A7J50_2013
Pfam:pfam01553 Acyltransferase.
       0.432
A7J50_3123
Acetylglucosaminylphosphatidylinositol deacetylase; Pfam:pfam02585 GlcNAc-PI de-N-acetylase.
  
     0.430
Your Current Organism:
Pseudomonas antarctica
NCBI taxonomy Id: 219572
Other names: CCUG 49625, DSM 15318, LMG 22709, LMG:22709, MTCC 4992, Pseudomonas antarctica Reddy et al. 2004, strain CMS 35
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.