STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A7J50_2467Inosose dehydratase; Pfam:pfam01261 Xylose isomerase-like TIM barrel. (296 aa)    
Predicted Functional Partners:
A7J50_2470
Putative thiamine pyrophosphate-dependent protein; Pfam:pfam02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; Belongs to the TPP enzyme family.
 
 
 0.996
A7J50_2469
Pfam:pfam01261 Xylose isomerase-like TIM barrel.
 
 
  0.995
iolG
Inositol 2-dehydrogenase; Involved in the oxidation of myo-inositol (MI) to 2-keto-myo- inositol (2KMI or 2-inosose).
 
 
 0.994
A7J50_2468
5-deoxyglucuronate isomerase; Pfam:pfam04962 KduI/IolB family.
 
  
 0.982
A7J50_2466
5-dehydro-2-deoxygluconokinase; Pfam:pfam09863 Uncharacterized protein conserved in bacteria (DUF2090).
  
 0.962
A7J50_3225
1-carboxy-3-chloro-3,4-dihydroxycyclo hexa-1,5-diene dehydrogenase; Pfam:pfam01408 Oxidoreductase family, NAD-binding Rossmann fold.
  
 0.931
A7J50_2465
RpiR family transcriptional regulator; Pfam:pfam01380 SIS domain.
 
   
 0.817
A7J50_2472
Oxidoreductase; Pfam:pfam01408 Oxidoreductase family, NAD-binding Rossmann fold.
 
  
 0.700
A7J50_2502
Oxidoreductase; Pfam:pfam01408 Oxidoreductase family, NAD-binding Rossmann fold.
 
  
 0.558
A7J50_5428
Fructose-bisphosphate aldolase; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis.
  
  
 0.460
Your Current Organism:
Pseudomonas antarctica
NCBI taxonomy Id: 219572
Other names: CCUG 49625, DSM 15318, LMG 22709, LMG:22709, MTCC 4992, Pseudomonas antarctica Reddy et al. 2004, strain CMS 35
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