STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A7J50_2739Pfam:pfam02706 Chain length determinant protein. (447 aa)    
Predicted Functional Partners:
A7J50_1648
Pfam:pfam08857 Putative ParB-like nuclease.
  
     0.659
A7J50_1811
Lipopolysaccharide biosynthesis protein.
 
  
 0.624
A7J50_2520
Pfam:pfam03573 outer membrane porin, OprD family.
  
     0.613
A7J50_5564
Thiol-disulfide isomerase.
  
     0.590
mraY
phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.
  
  
 0.575
A7J50_0466
Pfam:pfam00534 Glycosyl transferases group 1.
 
  
 0.574
A7J50_3029
Hypothetical protein; Pfam:pfam08980 Domain of unknown function (DUF1883).
  
     0.571
A7J50_4760
Pfam:pfam04338 Protein of unknown function, DUF481.
  
     0.561
A7J50_0465
Hypothetical protein.
  
     0.551
A7J50_0707
Hypothetical protein.
  
     0.548
Your Current Organism:
Pseudomonas antarctica
NCBI taxonomy Id: 219572
Other names: CCUG 49625, DSM 15318, LMG 22709, LMG:22709, MTCC 4992, Pseudomonas antarctica Reddy et al. 2004, strain CMS 35
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.