STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A7J50_2829Hypothetical protein. (214 aa)    
Predicted Functional Partners:
A7J50_2833
Pfam:pfam12261 Thermostable hemolysin.
 
   
 0.955
A7J50_2831
Long-chain fatty acid--CoA ligase; Pfam:pfam03070 TENA/THI-4/PQQC family.
 
     0.954
A7J50_2830
Pfam:pfam00106 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.953
A7J50_2832
Putative long-chain-fatty-acid-CoA ligase; Pfam:pfam00501 AMP-binding enzyme.
 
     0.950
A7J50_2827
Putative two-component system, sensor kinase protein; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
     0.848
A7J50_2828
XRE family transcriptional regulator; Pfam:pfam00072 Response regulator receiver domain.
     
 0.772
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
  
 0.547
A7J50_5669
DNA-binding protein; Pfam:pfam06146 Phosphate-starvation-inducible E.
  
     0.547
A7J50_2834
Pfam:pfam00033 Cytochrome b(N-terminal)/b6/petB.
       0.527
A7J50_1638
Pfam:pfam08241 Methyltransferase domain.
 
     0.515
Your Current Organism:
Pseudomonas antarctica
NCBI taxonomy Id: 219572
Other names: CCUG 49625, DSM 15318, LMG 22709, LMG:22709, MTCC 4992, Pseudomonas antarctica Reddy et al. 2004, strain CMS 35
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.