STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A7J50_3205Putative GntR-family regulatory protein; Pfam:pfam07729 FCD domain. (233 aa)    
Predicted Functional Partners:
A7J50_3206
GntR family transcriptional regulator; Pfam:pfam07729 FCD domain.
 
  
 0.912
A7J50_4291
GntR family transcriptional regulator; Pfam:pfam07729 FCD domain.
 
  
 0.777
A7J50_0125
GntR family transcriptional regulator; Pfam:pfam07729 FCD domain.
  
  
 0.765
A7J50_3641
Pfam:pfam00392 Bacterial regulatory proteins, gntR family.
  
     0.755
A7J50_1824
Pfam:pfam00392 Bacterial regulatory proteins, gntR family.
  
  
 0.654
A7J50_3207
Hypothetical protein.
       0.629
A7J50_3204
C4-dicarboxylate ABC transporter; Pfam:pfam00375 Sodium:dicarboxylate symporter family; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
  
    0.591
A7J50_4286
Pfam:pfam00392 Bacterial regulatory proteins, gntR family.
  
  
 0.564
A7J50_1078
Pfam:pfam00392 Bacterial regulatory proteins, gntR family.
 
  
 0.496
A7J50_1028
Pfam:pfam01614 Bacterial transcriptional regulator.
 
  
 0.476
Your Current Organism:
Pseudomonas antarctica
NCBI taxonomy Id: 219572
Other names: CCUG 49625, DSM 15318, LMG 22709, LMG:22709, MTCC 4992, Pseudomonas antarctica Reddy et al. 2004, strain CMS 35
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