STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A7J50_3628Amino acid ABC transporter permease; Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component. (233 aa)    
Predicted Functional Partners:
A7J50_3630
Amino acid transporter; Pfam:pfam00005 ABC transporter.
 
 0.991
A7J50_3629
Amino acid ABC transporter permease; Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
 
 
0.988
A7J50_3627
ABC transporter substrate-binding protein; Pfam:pfam00497 Bacterial extracellular solute-binding proteins, family 3.
  0.978
A7J50_1444
Histidine ABC transporter ATP-binding protein; Pfam:pfam00005 ABC transporter.
 
 0.965
A7J50_1448
ABC transporter substrate-binding protein; Pfam:pfam00497 Bacterial extracellular solute-binding proteins, family 3.
  0.957
A7J50_0237
Cystine transporter subunit; Pfam:pfam00497 Bacterial extracellular solute-binding proteins, family 3.
   0.937
A7J50_1447
Histidine/lysine/arginine/ornithine ABC transporter permease HisQ; Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
  
  
 
0.901
A7J50_1446
Histidine/lysine/arginine/ornithine ABC transporter permease HisM; Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
 
 
0.900
A7J50_4523
Histidine ABC transporter ATP-binding protein; Pfam:pfam00005 ABC transporter.
  
 0.838
A7J50_0302
ATP-binding protein; Pfam:pfam00005 ABC transporter.
  
 0.833
Your Current Organism:
Pseudomonas antarctica
NCBI taxonomy Id: 219572
Other names: CCUG 49625, DSM 15318, LMG 22709, LMG:22709, MTCC 4992, Pseudomonas antarctica Reddy et al. 2004, strain CMS 35
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