STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A7J50_4820Pfam:pfam00155 Aminotransferase class I and II. (382 aa)    
Predicted Functional Partners:
A7J50_4819
Pfam:pfam00795 Carbon-nitrogen hydrolase.
 
  
 0.902
A7J50_0403
Pfam:pfam01645 Conserved region in glutamate synthase.
     
 0.536
A7J50_3273
Pyoverdine synthetase I; Pfam:pfam00501 AMP-binding enzyme.
  
  
 0.532
der
GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
       0.531
A7J50_4929
NADPH quinone reductase MdaB; Pfam:pfam02525 Flavodoxin-like fold.
   
    0.479
A7J50_4774
Pfam:pfam00742 Homoserine dehydrogenase.
  
 
 0.461
A7J50_1802
P-protein; Pfam:pfam00800 Prephenate dehydratase.
 
  
 0.460
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
  
 
 0.447
hisS
Pfam:pfam00587 tRNA synthetase class II core domain (G, H, P, S and T).
  
 
 0.442
iscS
Cysteine desulfurase IscS; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins.
 
 
 0.427
Your Current Organism:
Pseudomonas antarctica
NCBI taxonomy Id: 219572
Other names: CCUG 49625, DSM 15318, LMG 22709, LMG:22709, MTCC 4992, Pseudomonas antarctica Reddy et al. 2004, strain CMS 35
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.