STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A7J50_5309Pfam:pfam04293 SpoVR like protein. (520 aa)    
Predicted Functional Partners:
A7J50_5308
Pfam:pfam04285 Protein of unknown function (DUF444); Belongs to the UPF0229 family.
 
  
 0.997
A7J50_5307
Protein kinase YeaG; Pfam:pfam08298 PrkA AAA domain.
 
  
 0.994
cca
2',3'-cyclic phosphodiesterase; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'-nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases.
     
 0.649
trpS
Tryptophan--tRNA ligase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
   
  
 0.639
A7J50_1894
Pfam:pfam05957 Bacterial protein of unknown function (DUF883).
   
    0.543
A7J50_3422
Pfam:pfam06930 Protein of unknown function (DUF1282).
   
  
 0.542
A7J50_0096
Transporter gate domain protein.
  
  
 0.517
A7J50_1034
Amino acid dehydrogenase; Pfam:pfam02812 Glu/Leu/Phe/Val dehydrogenase, dimerization domain; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
    0.504
A7J50_0344
Putative lipoprotein; Involved in the storage or transport of lipids necessary for membrane maintenance under stressful conditions. Displays a binding preference for lysophospholipids.
   
    0.482
glpE
Thiosulfate sulfurtransferase; Catalyzes, although with low efficiency, the sulfur transfer reaction from thiosulfate to cyanide.
       0.401
Your Current Organism:
Pseudomonas antarctica
NCBI taxonomy Id: 219572
Other names: CCUG 49625, DSM 15318, LMG 22709, LMG:22709, MTCC 4992, Pseudomonas antarctica Reddy et al. 2004, strain CMS 35
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.