STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001571405_01162Unannotated protein. (118 aa)    
Predicted Functional Partners:
GCA_001571405_01164
Unannotated protein.
 
  
 0.965
GCA_001571405_01163
Unannotated protein.
 
  
 
0.953
GCA_001571405_01177
Unannotated protein.
 
  
 0.951
GCA_001571405_01167
Unannotated protein.
    
 0.942
GCA_001571405_01176
Unannotated protein.
  
  
 
0.928
GCA_001571405_01165
Unannotated protein.
    
  0.581
hisD
Unannotated protein; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.
       0.553
GCA_001571405_01527
Unannotated protein.
 
   
 0.536
GCA_001571405_02279
Unannotated protein.
 
   
 0.494
GCA_001571405_00366
Unannotated protein.
  
 
  0.430
Your Current Organism:
Methanoculleus thermophilus
NCBI taxonomy Id: 2200
Other names: ATCC 33837, DSM 2373, M. thermophilus, Methaniculleus thermophilicus, Methanoculleus thermophilicum, Methanoculleus thermophilicus, Methanogenium frittonii, Methanogenium thermophilicum, Methanogenium thermophilum, OCM 174, strain CR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.