STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001571405_01169Unannotated protein. (377 aa)    
Predicted Functional Partners:
GCA_001571405_01175
Unannotated protein.
 
     0.544
GCA_001571405_00345
Unannotated protein.
  
     0.518
GCA_001571405_01174
Unannotated protein.
 
     0.503
taw1
Unannotated protein; Component of the wyosine derivatives biosynthesis pathway that catalyzes the condensation of N-methylguanine with 2 carbon atoms from pyruvate to form the tricyclic 4-demethylwyosine (imG-14) on guanosine-37 of tRNA(Phe).
  
     0.484
GCA_001571405_01168
Unannotated protein.
       0.470
GCA_001571405_01079
Unannotated protein; Belongs to the PDCD5 family.
 
     0.443
GCA_001571405_01170
Unannotated protein.
       0.422
GCA_001571405_01171
Unannotated protein.
       0.422
rpl21e
Unannotated protein; Belongs to the eukaryotic ribosomal protein eL21 family.
  
     0.417
GCA_001571405_00803
Unannotated protein.
  
     0.415
Your Current Organism:
Methanoculleus thermophilus
NCBI taxonomy Id: 2200
Other names: ATCC 33837, DSM 2373, M. thermophilus, Methaniculleus thermophilicus, Methanoculleus thermophilicum, Methanoculleus thermophilicus, Methanogenium frittonii, Methanogenium thermophilicum, Methanogenium thermophilum, OCM 174, strain CR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.