STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001571405_01314Unannotated protein. (335 aa)    
Predicted Functional Partners:
GCA_001571405_00004
Unannotated protein.
  
 0.910
GCA_001571405_01250
Unannotated protein.
  
 0.873
GCA_001571405_00476
Unannotated protein.
  
 
 0.852
GCA_001571405_01424
Unannotated protein.
    
 0.827
GCA_001571405_01572
Unannotated protein.
    
 0.827
rpl40e
Unannotated protein; Belongs to the eukaryotic ribosomal protein eL40 family.
    
  0.824
mutS
Unannotated protein; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.
   
 
 0.810
GCA_001571405_01671
Unannotated protein.
  
 0.807
atpC
Unannotated protein; Produces ATP from ADP in the presence of a proton gradient across the membrane.
     
 0.592
smc
Unannotated protein; Required for chromosome condensation and partitioning. Belongs to the SMC family.
 
 
 0.577
Your Current Organism:
Methanoculleus thermophilus
NCBI taxonomy Id: 2200
Other names: ATCC 33837, DSM 2373, M. thermophilus, Methaniculleus thermophilicus, Methanoculleus thermophilicum, Methanoculleus thermophilicus, Methanogenium frittonii, Methanogenium thermophilicum, Methanogenium thermophilum, OCM 174, strain CR-1
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