STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpl29Unannotated protein; Belongs to the universal ribosomal protein uL29 family. (67 aa)    
Predicted Functional Partners:
eif5a
Unannotated protein; Functions by promoting the formation of the first peptide bond; Belongs to the eIF-5A family.
   
 
 0.999
rps17e
Unannotated protein; Belongs to the eukaryotic ribosomal protein eS17 family.
 
 
 0.999
rpl24e
Unannotated protein; Binds to the 23S rRNA.
   
 0.999
rps28e
Unannotated protein; Belongs to the eukaryotic ribosomal protein eS28 family.
   
 
 0.999
rpl7ae
Unannotated protein; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs.
 
 0.999
rps10
Unannotated protein; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
  
 
 0.999
rpl10e
Unannotated protein; Belongs to the universal ribosomal protein uL16 family.
  
 0.999
rpl40e
Unannotated protein; Belongs to the eukaryotic ribosomal protein eL40 family.
   
 0.999
rps24e
Unannotated protein; Belongs to the eukaryotic ribosomal protein eS24 family.
  
 
 0.999
rps12
Unannotated protein; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. Belongs to the universal ribosomal protein uS12 family.
  
 
 0.999
Your Current Organism:
Methanoculleus thermophilus
NCBI taxonomy Id: 2200
Other names: ATCC 33837, DSM 2373, M. thermophilus, Methaniculleus thermophilicus, Methanoculleus thermophilicum, Methanoculleus thermophilicus, Methanogenium frittonii, Methanogenium thermophilicum, Methanogenium thermophilum, OCM 174, strain CR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.