STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Score
STY1664Putative ferredoxin-like protein, cytoplasmic membrane; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Required to maintain the reduced state of SoxR; Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. (192 aa)    
Predicted Functional Partners:
STY1663
Putative membrane protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Required to maintain the reduced state of SoxR.
 
 
 0.998
STY1665
Putative NADH reducing dehydrogenase; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Required to maintain the reduced state of SoxR; Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily.
 
 0.991
STY1667
Conserved hypothetical protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Required to maintain the reduced state of SoxR; Belongs to the RnfG family.
 
 
 0.991
STY1666
Putative membrane protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Required to maintain the reduced state of SoxR; Belongs to the NqrB/RnfD family.
 
 
 0.989
ydgQ
Conserved hypothetical protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Required to maintain the reduced state of SoxR.
 
 
 0.989
pduS
Putative ferredoxin; Similar to Salmonella enterica serovar Typhimurium protein PduS pduS TR:Q9XDM9 (EMBL:AF026270) (451 aa) fasta scores: E(): 0, 97.7% id in 442 aa and Clostridium sticklandii electron transfer protein from the D-proline reductase cluster prdC TR:Q9L4Q5 (EMBL:AJ130879) (402 aa) fasta scores: E(): 1.5e-24, 32.3% id in 337 aa. The N-terminus is truncated by 9 amino acids with respect to the Salmonella enterica homologue (by a stop codon). The putative start codon indicated here is at codon 10 of the Salmonella enterica homologue.
 
 0.937
STY1419
Similar to Escherichia coli probable pyruvate-flavodoxin oxidoreductase ydbK SW:NIFJ_ECOLI (P52647; P77238) (1174 aa) fasta scores: E(): 0, 92.9% id in 1174 aa; Orthologue of E. coli NIFJ_ECOLI; Fasta hit to NIFJ_ECOLI (1174 aa), 93% identity in 1174 aa overlap.
     
 0.931
STY1669
Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.
  
  
 0.888
STY2872
Conserved hypothetical protein; Similar to Rhodobacter capsulatus protein RnfH rnfH TR:P97056 (EMBL:Y11913) (85 aa) fasta scores: E(): 1.2e-07, 39.8% id in 83 aa; Orthologue of E. coli YFJF_ECOLI; Fasta hit to YFJF_ECOLI (96 aa), 90% identity in 90 aa overlap; Belongs to the UPF0125 (RnfH) family.
 
   
 0.811
STY1662
Putative membrane protein; Orthologue of E. coli YDGK_ECOLI; Fasta hit to YDGK_ECOLI (146 aa), 83% identity in 146 aa overlap.
  
    0.712
Your Current Organism:
Salmonella enterica Typhi
NCBI taxonomy Id: 220341
Other names: S. enterica subsp. enterica serovar Typhi str. CT18, Salmonella enterica subsp. enterica serovar Typhi CT18, Salmonella enterica subsp. enterica serovar Typhi str. CT18, Salmonella enterica subsp. enterica serovar Typhi strain CT18, Salmonella typhi CT18
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