Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| STY2585 | STY2586 | gene:17586484 | gene:17586485 | Similar to Salmonella typhimurium lysine-arginine-ornithine-binding periplasmic protein precursor argT SW:ARGT_SALTY (P02911) (260 aa) fasta scores: E(): 0, 99.2% id in 260 aa; Fasta hit to HISJ_ECOLI (260 aa), 68% identity in 259 aa overlap; Fasta hit to ARTI_ECOLI (243 aa), 34% identity in 255 aa overlap; Fasta hit to ARTJ_ECOLI (243 aa), 36% identity in 254 aa overlap; Fasta hit to GLNH_ECOLI (248 aa), 32% identity in 253 aa overlap; Orthologue of E. coli argT (ARGT_ECOLI); Fasta hit to ARGT_ECOLI (260 aa), 92% identity in 260 aa overlap; Belongs to the bacterial solute-binding prot [...] | Putative decarboxylase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN. | 0.602 |
| STY2586 | STY2585 | gene:17586485 | gene:17586484 | Putative decarboxylase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN. | Similar to Salmonella typhimurium lysine-arginine-ornithine-binding periplasmic protein precursor argT SW:ARGT_SALTY (P02911) (260 aa) fasta scores: E(): 0, 99.2% id in 260 aa; Fasta hit to HISJ_ECOLI (260 aa), 68% identity in 259 aa overlap; Fasta hit to ARTI_ECOLI (243 aa), 34% identity in 255 aa overlap; Fasta hit to ARTJ_ECOLI (243 aa), 36% identity in 254 aa overlap; Fasta hit to GLNH_ECOLI (248 aa), 32% identity in 253 aa overlap; Orthologue of E. coli argT (ARGT_ECOLI); Fasta hit to ARGT_ECOLI (260 aa), 92% identity in 260 aa overlap; Belongs to the bacterial solute-binding prot [...] | 0.602 |
| STY2586 | STY2587 | gene:17586485 | gene:17586486 | Putative decarboxylase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN. | Similar to many e.g. Bacillus subtilis amino-acid permease RocE rocE SW:ROCE_BACSU (P39137) (467 aa) fasta scores: E(): 0, 39.5% id in 418 aa. Contains hydrophobic, probable membrane-spanning regions; Fasta hit to CYCA_ECOLI (470 aa), 34% identity in 409 aa overlap; Fasta hit to PHEP_ECOLI (458 aa), 33% identity in 423 aa overlap; Fasta hit to LYSP_ECOLI (488 aa), 38% identity in 429 aa overlap; Fasta hit to YIFK_ECOLI (461 aa), 34% identity in 424 aa overlap; Fasta hit to PROY_ECOLI (457 aa), 35% identity in 405 aa overlap; Fasta hit to GABP_ECOLI (466 aa), 35% identity in 431 aa over [...] | 0.502 |
| STY2586 | STY3046 | gene:17586485 | gene:17586937 | Putative decarboxylase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN. | Possible decarboxylase; Involved in the non-oxidative decarboxylation and detoxification of phenolic derivatives. Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for phenolic acid decarboxylase. | 0.904 |
| STY2586 | STY3047 | gene:17586485 | gene:17586938 | Putative decarboxylase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN. | Conserved hypothetical protein; Involved in the non-oxidative decarboxylation and detoxification of phenolic derivatives. | 0.987 |
| STY2586 | STY3048 | gene:17586485 | gene:17586939 | Putative decarboxylase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN. | Similar to Streptomyces sp. D7 hypothetical protein VdcD which is encoded by a gene within the vanillic acid decarboxylation cluster TR:Q9X698 (EMBL:AF134589) (79 aa) fasta scores: E(): 3.4e-17, 60.6% id in 71 aa. | 0.907 |
| STY2586 | STY3212 | gene:17586485 | gene:17587087 | Putative decarboxylase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN. | Possible monooxygenase; Highly similar to Escherichia coli hypothetical protein VisC SW:VISC_ECOLI (P25535) (400 aa) fasta scores: E(): 0, 86.1% id in 388 aa and also weakly similar to Escherichia coli 2-octaprenyl-6-methoxyphenol hydroxylase VisB SW:UBIH_ECOLI (P25534) (392 aa) fasta scores: E(): 2.7e-29, 29.7% id in 390 aa; Fasta hit to YLEB_ECOLI (391 aa), 38% identity in 380 aa overlap; Orthologue of E. coli visC (VISC_ECOLI); Fasta hit to VISC_ECOLI (400 aa), 86% identity in 388 aa overlap. | 0.906 |
| STY2586 | STY3581 | gene:17586485 | gene:17587433 | Putative decarboxylase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN. | Conserved hypothetical protein; Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis. | 0.987 |
| STY2586 | STY4430 | gene:17586485 | gene:17588262 | Putative decarboxylase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN. | 4-hydroxybenzoate octaprenyl transferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate. | 0.945 |
| STY2587 | STY2586 | gene:17586486 | gene:17586485 | Similar to many e.g. Bacillus subtilis amino-acid permease RocE rocE SW:ROCE_BACSU (P39137) (467 aa) fasta scores: E(): 0, 39.5% id in 418 aa. Contains hydrophobic, probable membrane-spanning regions; Fasta hit to CYCA_ECOLI (470 aa), 34% identity in 409 aa overlap; Fasta hit to PHEP_ECOLI (458 aa), 33% identity in 423 aa overlap; Fasta hit to LYSP_ECOLI (488 aa), 38% identity in 429 aa overlap; Fasta hit to YIFK_ECOLI (461 aa), 34% identity in 424 aa overlap; Fasta hit to PROY_ECOLI (457 aa), 35% identity in 405 aa overlap; Fasta hit to GABP_ECOLI (466 aa), 35% identity in 431 aa over [...] | Putative decarboxylase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN. | 0.502 |
| STY3046 | STY2586 | gene:17586937 | gene:17586485 | Possible decarboxylase; Involved in the non-oxidative decarboxylation and detoxification of phenolic derivatives. Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for phenolic acid decarboxylase. | Putative decarboxylase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN. | 0.904 |
| STY3046 | STY3047 | gene:17586937 | gene:17586938 | Possible decarboxylase; Involved in the non-oxidative decarboxylation and detoxification of phenolic derivatives. Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for phenolic acid decarboxylase. | Conserved hypothetical protein; Involved in the non-oxidative decarboxylation and detoxification of phenolic derivatives. | 0.998 |
| STY3046 | STY3048 | gene:17586937 | gene:17586939 | Possible decarboxylase; Involved in the non-oxidative decarboxylation and detoxification of phenolic derivatives. Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for phenolic acid decarboxylase. | Similar to Streptomyces sp. D7 hypothetical protein VdcD which is encoded by a gene within the vanillic acid decarboxylation cluster TR:Q9X698 (EMBL:AF134589) (79 aa) fasta scores: E(): 3.4e-17, 60.6% id in 71 aa. | 0.980 |
| STY3046 | STY3212 | gene:17586937 | gene:17587087 | Possible decarboxylase; Involved in the non-oxidative decarboxylation and detoxification of phenolic derivatives. Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for phenolic acid decarboxylase. | Possible monooxygenase; Highly similar to Escherichia coli hypothetical protein VisC SW:VISC_ECOLI (P25535) (400 aa) fasta scores: E(): 0, 86.1% id in 388 aa and also weakly similar to Escherichia coli 2-octaprenyl-6-methoxyphenol hydroxylase VisB SW:UBIH_ECOLI (P25534) (392 aa) fasta scores: E(): 2.7e-29, 29.7% id in 390 aa; Fasta hit to YLEB_ECOLI (391 aa), 38% identity in 380 aa overlap; Orthologue of E. coli visC (VISC_ECOLI); Fasta hit to VISC_ECOLI (400 aa), 86% identity in 388 aa overlap. | 0.906 |
| STY3046 | STY3581 | gene:17586937 | gene:17587433 | Possible decarboxylase; Involved in the non-oxidative decarboxylation and detoxification of phenolic derivatives. Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for phenolic acid decarboxylase. | Conserved hypothetical protein; Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis. | 0.986 |
| STY3046 | STY4430 | gene:17586937 | gene:17588262 | Possible decarboxylase; Involved in the non-oxidative decarboxylation and detoxification of phenolic derivatives. Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for phenolic acid decarboxylase. | 4-hydroxybenzoate octaprenyl transferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate. | 0.932 |
| STY3047 | STY2586 | gene:17586938 | gene:17586485 | Conserved hypothetical protein; Involved in the non-oxidative decarboxylation and detoxification of phenolic derivatives. | Putative decarboxylase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN. | 0.987 |
| STY3047 | STY3046 | gene:17586938 | gene:17586937 | Conserved hypothetical protein; Involved in the non-oxidative decarboxylation and detoxification of phenolic derivatives. | Possible decarboxylase; Involved in the non-oxidative decarboxylation and detoxification of phenolic derivatives. Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for phenolic acid decarboxylase. | 0.998 |
| STY3047 | STY3048 | gene:17586938 | gene:17586939 | Conserved hypothetical protein; Involved in the non-oxidative decarboxylation and detoxification of phenolic derivatives. | Similar to Streptomyces sp. D7 hypothetical protein VdcD which is encoded by a gene within the vanillic acid decarboxylation cluster TR:Q9X698 (EMBL:AF134589) (79 aa) fasta scores: E(): 3.4e-17, 60.6% id in 71 aa. | 0.993 |
| STY3048 | STY2586 | gene:17586939 | gene:17586485 | Similar to Streptomyces sp. D7 hypothetical protein VdcD which is encoded by a gene within the vanillic acid decarboxylation cluster TR:Q9X698 (EMBL:AF134589) (79 aa) fasta scores: E(): 3.4e-17, 60.6% id in 71 aa. | Putative decarboxylase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN. | 0.907 |
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