Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
STY3403 | STY3404 | gene:17587257 | gene:17587258 | Possible oxidoreductase; Similar to Escherichia coli hypothetical protein YgjR SW:YGJR_ECOLI (P42599; P42600; P76661) (328 aa) fasta scores: E(): 0, 83.1% id in 326 aa and to Sus scrofa (Pig) dimeric dihydrodiol dehydrogenase Sus2dD TR:Q9TV69 (EMBL:AB021929) (335 aa) fasta scores: E(): 2.9e-15, 25.4% id in 346 aa. | Possible drug efflux protein; Has been proposed to be a redox modulator. Belongs to the TerC family. | 0.439 |
STY3404 | STY3403 | gene:17587258 | gene:17587257 | Possible drug efflux protein; Has been proposed to be a redox modulator. Belongs to the TerC family. | Possible oxidoreductase; Similar to Escherichia coli hypothetical protein YgjR SW:YGJR_ECOLI (P42599; P42600; P76661) (328 aa) fasta scores: E(): 0, 83.1% id in 326 aa and to Sus scrofa (Pig) dimeric dihydrodiol dehydrogenase Sus2dD TR:Q9TV69 (EMBL:AB021929) (335 aa) fasta scores: E(): 2.9e-15, 25.4% id in 346 aa. | 0.439 |
STY3404 | STY3405 | gene:17587258 | gene:17587259 | Possible drug efflux protein; Has been proposed to be a redox modulator. Belongs to the TerC family. | Probable membrane transport protein; Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system). Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. | 0.468 |
STY3405 | STY3404 | gene:17587259 | gene:17587258 | Probable membrane transport protein; Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system). Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. | Possible drug efflux protein; Has been proposed to be a redox modulator. Belongs to the TerC family. | 0.468 |