STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
STY3900Conserved hypothetical protein; Orthologue of E. coli YIEM_ECOLI; Fasta hit to YIEM_ECOLI (427 aa), 89% identity in 427 aa overlap. Note the predicted product of this CDS is 56 residues longer than the E. coli orthologue. (483 aa)    
Predicted Functional Partners:
STY3899
Conserved hypothetical protein; Functions as an ATPase. May play a role in metal insertion (metal-chelatase) or as a chaperone; Belongs to the RavA family.
 
  
 0.975
ytfK
Similar to Escherichia coli hypothetical 8.1 kDa protein in cysq-msra intergenic region ytfK SW:YTFK_ECOLI (P39318) (68 aa) fasta scores: E(): 1.4e-25, 97.1% id in 68 aa.
  
     0.771
STY1080
Conserved hypothetical protein; Contributes to the efficiency of the cell division process by stabilizing the polymeric form of the cell division protein FtsZ. Acts by promoting interactions between FtsZ protofilaments and suppressing the GTPase activity of FtsZ.
  
     0.753
STY1335
Conserved hypothetical protein; Orthologue of E. coli yciN (YCIN_ECOLI); Fasta hit to YCIN_ECOLI (83 aa), 93% identity in 83 aa overlap.
  
     0.752
STY2157
Conserved hypothetical protein; Orthologue of E. coli yecF (YECF_ECOLI); Fasta hit to YECF_ECOLI (74 aa), 88% identity in 74 aa overlap.
  
     0.747
STY0364
Curlin genes transcriptional activator; Binds to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. Stimulates RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32; Belongs to the Crl family.
  
     0.743
STY1423
Putative exported protein; Orthologue of E. coli YDBH_ECOLI; Fasta hit to YDBH_ECOLI (879 aa), 79% identity in 878 aa overlap.
  
   
 0.740
STY1250
Conserved hypothetical protein; Orthologue of E. coli YCFP_ECOLI; Fasta hit to YCFP_ECOLI (199 aa), 94% identity in 180 aa overlap; Belongs to the UPF0227 family.
  
     0.732
STY3906
ATP synthase protein I; Orthologue of E. coli atpI (ATPZ_ECOLI); Fasta hit to ATPZ_ECOLI (125 aa), 91% identity in 124 aa overlap. Contains possible membrane spanning hydrophobic domains.
  
     0.719
STY3746
Putative membrane protein; Similar to Escherichia coli hypothetical 13.0 kDa protein in udha-trma intergenic region yijD SW:YIJD_ECOLI (P27308) (119 aa) fasta scores: E(): 0, 89.9% id in 119 aa. Contains possible membrane spanning hydrophobic domains.
  
     0.717
Your Current Organism:
Salmonella enterica Typhi
NCBI taxonomy Id: 220341
Other names: S. enterica subsp. enterica serovar Typhi str. CT18, Salmonella enterica subsp. enterica serovar Typhi CT18, Salmonella enterica subsp. enterica serovar Typhi str. CT18, Salmonella enterica subsp. enterica serovar Typhi strain CT18, Salmonella typhi CT18
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