STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
STY4213Similar to Escherichia coli universal stress protein B UspB SW:USPB_ECOLI (P37632) (111 aa) fasta scores: E(): 0, 95.5% id in 111 aa. Predicted hydrophobic membrane spanning domains, integral membrane protein. (111 aa)    
Predicted Functional Partners:
STY3544
Conserved hypothetical protein; Orthologue of E. coli YHCO_ECOLI; Fasta hit to YHCO_ECOLI (90 aa), 77% identity in 90 aa overlap.
  
    0.788
STY0517
Conserved hypothetical protein; Orthologue of E. coli ybaJ (YBAJ_ECOLI); Fasta hit to YBAJ_ECOLI (124 aa), 95% identity in 124 aa overlap.
  
   
 0.768
STY0789
Putative membrane protein; Similar to Escherichia coli 10.9 kDa protein in cydb-tolq intergenic region SW:YBGE_ECOLI (P37343) (97 aa) fasta scores: E(): 0, 86.7% id in 90 aa, and to Vibrio cholerae hypothetical protein Vc1841 vc1841 TR:Q9KR06 (EMBL:AE004260) (105 aa) fasta scores: E(): 1.2e-09, 38.5% id in 78 aa.
  
     0.762
STY1211
Negative regulator of flagellin synthesis (anti-sigma factor); Orthologue of E. coli flgM (FLGM_ECOLI); Fasta hit to FLGM_ECOLI (97 aa), 80% identity in 96 aa overlap.
  
     0.756
STY1246
Putative lipoprotein; Orthologue of E. coli YCFL_ECOLI; Fasta hit to YCFL_ECOLI (125 aa), 81% identity in 125 aa overlap.
  
     0.752
STY4440
Putative membrane protein; Similar to Escherichia coli hypothetical protein YjbO SW:YJBO_ECOLI (P32696) (80 aa) fasta scores: E(): 1.9e-23, 82.5% id in 80 aa. Contains predicted transmembrane helices.
  
     0.743
yjeT
Putative membrane protein; Similar to Escherichia coli hypothetical 7.2 kDa protein in hflc-pura intergenic region yjeT SW:YJET_ECOLI (P39289) (65 aa) fasta scores: E(): 4.1e-22, 89.2% id in 65 aa Contains possible membrane spanning hydrophobic domains.
  
     0.740
STY1652
DNA replication terminus site-binding protein; Trans-acting protein required for termination of DNA replication. Binds to DNA replication terminator sequences (terA to terF) to prevent the passage of replication forks. The termination efficiency will be affected by the affinity of this protein for the terminator sequence; Belongs to the Tus family.
  
     0.733
STY3811
Extracytoplasmic stress protein for protein-mediated toxicities; Similar to Escherichia coli periplasmic protein CpxP precursor SW:CPXP_ECOLI () (166 aa) fasta scores: E(): 0, 88.6% id in 166 aa. Contains a possible N-terminal signal sequence; Fasta hit to SPY_ECOLI (161 aa), 32% identity in 159 aa overlap.
  
   
 0.731
STY2116
Similar to Haemophilus influenzae hypothetical protein Hi1582/1581 hi1582/1581 SW:YECM_HAEIN (P44262; P44261) (191 aa) fasta scores: E(): 2.5e-21, 38.0% id in 184 aa; Orthologue of E. coli YECM_ECOLI; Fasta hit to YECM_ECOLI (188 aa), 85% identity in 188 aa overlap.
  
     0.727
Your Current Organism:
Salmonella enterica Typhi
NCBI taxonomy Id: 220341
Other names: S. enterica subsp. enterica serovar Typhi str. CT18, Salmonella enterica subsp. enterica serovar Typhi CT18, Salmonella enterica subsp. enterica serovar Typhi str. CT18, Salmonella enterica subsp. enterica serovar Typhi strain CT18, Salmonella typhi CT18
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.