STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yjeMPutative amino acid permease; Similar to Escherichia coli hypothetical protein YjeM yjeM SW:YJEM_ECOLI (P39282) (500 aa) fasta scores: E(): 0, 87.4% id in 500 aa and to Salmonella typhimurium hypothetical protein YjeM yjeM SW:YJEM_SALTY (Q9ZJ11) (153 aa) fasta scores: E(): 0, 98.0% id in 153 aa. (500 aa)    
Predicted Functional Partners:
yjeN
Similar to Escherichia coli hypothetical 11.8 kDa protein in genx-psd intergenic region yjeN SW:YJEN_ECOLI (P39283) (104 aa) fasta scores: E(): 4.3e-28, 69.6% id in 102 aa.
  
  
 0.869
STY4704
lysyl-tRNA synthetase; With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF- P) on 'Lys-34'. Catalyzes the ATP-dependent activation of (R)-beta- lysine produced by EpmB, forming a lysyl-adenylate, from which the beta-lysyl moiety is then transferred to the epsilon-amino group of EF- P 'Lys-34'; Belongs to the class-II aminoacyl-tRNA synthetase family. EpmA subfamily.
  
    0.733
STY2807
Putative transmembrane transport protein; Similar to many transporters e.g. Lactococcus lactis di-/tripeptide transporter SW:DTPT_LACLA (P36574) (463 aa) fasta scores: E(): 3.5e-23, 28.0% id in 471 aa. Contains hydrophobic, probable membrane-spanning regions; Fasta hit to YBGH_ECOLI (493 aa), 59% identity in 474 aa overlap; Fasta hit to YDGR_ECOLI (500 aa), 30% identity in 472 aa overlap; Orthologue of E. coli YJDL_ECOLI; Fasta hit to YJDL_ECOLI (485 aa), 80% identity in 487 aa overlap.
  
 
   0.455
STY0750
PTR2-family transport protein; Probable proton-dependent permease that transports dipeptides; Belongs to the PTR2/POT transporter (TC 2.A.17) family. DtpD subfamily.
  
 
   0.432
Your Current Organism:
Salmonella enterica Typhi
NCBI taxonomy Id: 220341
Other names: S. enterica subsp. enterica serovar Typhi str. CT18, Salmonella enterica subsp. enterica serovar Typhi CT18, Salmonella enterica subsp. enterica serovar Typhi str. CT18, Salmonella enterica subsp. enterica serovar Typhi strain CT18, Salmonella typhi CT18
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