STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
staEPutative fimbrial protein; Orthologue of E. coli yadL (YADL_ECOLI); Fasta hit to YADL_ECOLI (201 aa), 40% identity in 203 aa overlap. (204 aa)    
Predicted Functional Partners:
staD
Putative fimbrial protein; Some similarity to Escherichia coli AC/I pili pilAC/I or sfaA TR:Q57238 (EMBL:X76121) (181 aa) fasta scores: E(): 0.00068, 24.6% id in 187 aa, and to Escherichia coli type-1 fimbrial protein, a chain precursor fimA or pilA SW:FM1A_ECOLI (P04128) (182 aa) fasta scores: E(): 0.024, 26.1% id in 165 aa; Orthologue of E. coli yadM (YADM_ECOLI); Fasta hit to YADM_ECOLI (189 aa), 43% identity in 181 aa overlap.
  
  
 0.931
staF
Putative fimbrial protein; Similar to Escherichia coli major fimbrial subunit protein precursor f17d-A TR:Q47196 (EMBL:L77091) (181 aa) fasta scores: E(): 4.2e-05, 25.4% id in 181 aa, and to Klebsiella pneumoniae fimbrial subunit type 3 precursor mrkA SW:FM3_KLEPN (P12267) (202 aa) fasta scores: E(): 0.00013, 24.9% id in 205 aa; Orthologue of E. coli yadK (YADK_ECOLI); Fasta hit to YADK_ECOLI (198 aa), 37% identity in 174 aa overlap.
  
  
 0.912
staC
Outer membrane usher protein HtrE precursor; Fasta hit to YCBS_ECOLI (866 aa), 32% identity in 873 aa overlap; Fasta hit to YRAJ_ECOLI (838 aa), 34% identity in 841 aa overlap; Fasta hit to FIMD_ECOLI (878 aa), 33% identity in 881 aa overlap; Fasta hit to YEHB_ECOLI (826 aa), 32% identity in 833 aa overlap; Fasta hit to SFMD_ECOLI (867 aa), 31% identity in 866 aa overlap; Orthologue of E. coli htrE (HTRE_ECOLI); Fasta hit to HTRE_ECOLI (865 aa), 60% identity in 852 aa overlap.
  
   0.814
staG
Putative fimbrial protein; Similar to Serratia marcescens fimbria a protein precursor smfA SW:FMA_SERMA (P13421) (174 aa) fasta scores: E(): 0.96, 24.6% id in 142 aa, and to Salmonella typhimurium long polar fimbria protein a precursor lpfA SW:LPFA_SALTY (P43660) (178 aa) fasta scores: E(): 2.3, 26.3% id in 156 aa; Orthologue of E. coli yadC (YADC_ECOLI); Fasta hit to YADC_ECOLI (412 aa), 34% identity in 407 aa overlap.
  
  
 0.693
staB
Chaperone protein EcpD precursor; Fasta hit to YEHC_ECOLI (239 aa), 34% identity in 237 aa overlap; Fasta hit to YCBR_ECOLI (233 aa), 33% identity in 233 aa overlap; Fasta hit to YRAI_ECOLI (231 aa), 36% identity in 213 aa overlap; Fasta hit to FIMC_ECOLI (241 aa), 33% identity in 215 aa overlap; Fasta hit to YFCS_ECOLI (250 aa), 33% identity in 234 aa overlap; Fasta hit to YCBF_ECOLI (245 aa), 30% identity in 216 aa overlap; Fasta hit to SFMC_ECOLI (230 aa), 31% identity in 239 aa overlap; Fasta hit to YQIH_ECOLI (252 aa), 31% identity in 239 aa overlap; Fasta hit to YBGP_ECOLI (242 a [...]
  
   0.649
STY0200
3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.
       0.451
Your Current Organism:
Salmonella enterica Typhi
NCBI taxonomy Id: 220341
Other names: S. enterica subsp. enterica serovar Typhi str. CT18, Salmonella enterica subsp. enterica serovar Typhi CT18, Salmonella enterica subsp. enterica serovar Typhi str. CT18, Salmonella enterica subsp. enterica serovar Typhi strain CT18, Salmonella typhi CT18
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.